Submit Manuscript  

Article Details


AU Content in the MicroRNA Sequence Influences its Stability after Heat Treatment

[ Vol. 8 , Issue. 3 ]

Author(s):

Agnès Garcias López, Louise Brogaard, Peter Mikail Helwag Heegaard, Susanna Cirera and Kerstin Skovgaard*   Pages 216 - 222 ( 7 )

Abstract:


Background: MicroRNAs (miRNAs) are short non-coding RNA molecules which regulate gene expression post-transcriptionally and are involved in a multitude of cellular processes. MiRNAs are known to be very stable compared to messenger RNAs (mRNAs), making them excellent candidates as biomarkers for disease. Recently, studies have suggested that miRNA stability in formalin fixed samples might depend on their nucleotide composition.

Objective: To explore the stability of a panel of miRNAs isolated from porcine blood and lung tissue after heat and enzyme treatment.

Method: Porcine RNA isolated from lung tissue and blood leukocytes was used for this study. RNA samples were exposed to heat treatment and RNAse A digestion. The levels of selected miRNAs were measured by means of qPCR before and after heat and enzyme treatment.

Results: Fourteen miRNAs were successfully analysed, and they were found to degrade differently after exposure to heat or RNAse A. MiRNAs with <60% of adenine (A) and uracil (U) in their sequence were found to be more stable.

Conclusion: This is the first study showing that different miRNAs isolated from lung tissue display unequal stability after heat treatment, probably based on their nucleotide composition, highlighting the importance of considering the miRNA sequence when investigating their value as biomarkers.

Keywords:

% AU, heat treatment, miRNA, RNAse A digestion, stability, saliva.

Affiliation:

Department of Biotechnology and Biomedicine, Technical University of Denmark, Kongens Lyngby, Department of Biotechnology and Biomedicine, Technical University of Denmark, Kongens Lyngby, Department of Biotechnology and Biomedicine, Technical University of Denmark, Kongens Lyngby, Department of Veterinary and Animal Sciences, Faculty of Health, University of Copenhagen, Copenhagen, Department of Biotechnology and Biomedicine, Technical University of Denmark, Kongens Lyngby

Graphical Abstract:



Read Full-Text article